Protein Info for RS_RS22555 in Ralstonia solanacearum GMI1000

Annotation: aquaporin family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 221 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 39 to 60 (22 residues), see Phobius details amino acids 83 to 103 (21 residues), see Phobius details amino acids 123 to 141 (19 residues), see Phobius details amino acids 152 to 173 (22 residues), see Phobius details amino acids 191 to 212 (22 residues), see Phobius details PF00230: MIP" amino acids 7 to 143 (137 residues), 47.5 bits, see alignment E=9.9e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RS05492)

Predicted SEED Role

"Aquaporin Z"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XQU1 at UniProt or InterPro

Protein Sequence (221 amino acids)

>RS_RS22555 aquaporin family protein (Ralstonia solanacearum GMI1000)
MTDLRPRLLAEALGTALLLAVVIGSGIMAERLAGGNAAVALLANTAATVGGLYVLIEVFG
PLSGGHFNPVVSAVMAVRGELPGAVLVAYIGAQLAGAVLGAWLAHAMFDLPILQWSTKVR
GGAGQWIAEAVATAGLLLVILRAPSARAAPMVASYIGAAYWFTASTSFANPAAAVGRMLS
NSFAGIAPSSVPAFVISQCVGAALGLMLHRLLEPRPTRRNR