Protein Info for RS_RS22185 in Ralstonia solanacearum GMI1000

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 549 transmembrane" amino acids 24 to 48 (25 residues), see Phobius details amino acids 85 to 104 (20 residues), see Phobius details amino acids 114 to 133 (20 residues), see Phobius details amino acids 139 to 161 (23 residues), see Phobius details amino acids 174 to 193 (20 residues), see Phobius details amino acids 212 to 231 (20 residues), see Phobius details amino acids 272 to 294 (23 residues), see Phobius details amino acids 322 to 343 (22 residues), see Phobius details amino acids 355 to 374 (20 residues), see Phobius details amino acids 380 to 405 (26 residues), see Phobius details amino acids 417 to 439 (23 residues), see Phobius details amino acids 451 to 475 (25 residues), see Phobius details amino acids 519 to 541 (23 residues), see Phobius details PF07690: MFS_1" amino acids 33 to 433 (401 residues), 122.2 bits, see alignment E=1.2e-39

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RS02384)

Predicted SEED Role

"MFS permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XR21 at UniProt or InterPro

Protein Sequence (549 amino acids)

>RS_RS22185 MFS transporter (Ralstonia solanacearum GMI1000)
MSEAVLHPFFSRERTVAAVGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSRALGITQSH
TCGADVSLIAELFTTSCDWRISSLGWMYTLFFVFLGASAALWGGWLERVGPRKAGVVSAV
CWCGGLLISAFGVQTHQLWMLWIGSGVIGGIGLGLGYISPVSTLIKWFPDKRGMATGMAI
MGFGGGAMIGAPLADRLMKLFASADSVGVSQTFIVLAAIYFVFMMAGALGYRVPPAGWKP
AGWKPSPAKANDTMVTQRHVHVSQAVKTPQFWLIWAVLCLNVSAGIGVLGMASPLLQEVF
GGKLLGVTTAFTELTAAQKGQIAAIAAGFTGLLSLFNIGGRFFWASLSDRLGRKLTYAVF
FALGFVLYAAIPWTSHTSNIALFSLAFCVILSMYGGGFATVPAYLADMFGTQMVGAIHGR
LLTAWSTAGILGPVLVNYLREYQIAHGVARAAVYDITMMVLAGLLVLGFICNLLVRPVDP
KHFMTEAQLDEQRHAATAATPQANAPETSLEWQAHPGSAVAVVLAWAAVGLPLGWGVWIT
LQKAAVLFS