Protein Info for RS_RS20925 in Ralstonia solanacearum GMI1000

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 418 transmembrane" amino acids 42 to 61 (20 residues), see Phobius details amino acids 67 to 86 (20 residues), see Phobius details amino acids 95 to 114 (20 residues), see Phobius details amino acids 120 to 141 (22 residues), see Phobius details amino acids 153 to 173 (21 residues), see Phobius details amino acids 179 to 198 (20 residues), see Phobius details amino acids 235 to 256 (22 residues), see Phobius details amino acids 272 to 292 (21 residues), see Phobius details amino acids 301 to 319 (19 residues), see Phobius details amino acids 325 to 346 (22 residues), see Phobius details amino acids 364 to 385 (22 residues), see Phobius details amino acids 390 to 409 (20 residues), see Phobius details PF07690: MFS_1" amino acids 34 to 285 (252 residues), 123.8 bits, see alignment E=8.2e-40 amino acids 261 to 413 (153 residues), 55.9 bits, see alignment E=3.5e-19 PF00083: Sugar_tr" amino acids 36 to 197 (162 residues), 56 bits, see alignment E=3.5e-19 amino acids 223 to 417 (195 residues), 38.7 bits, see alignment E=5.9e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RS01910)

Predicted SEED Role

"Major facilitator superfamily (MFS) transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XRN4 at UniProt or InterPro

Protein Sequence (418 amino acids)

>RS_RS20925 MFS transporter (Ralstonia solanacearum GMI1000)
MDAHVNTSVPDTGAPVACPARTSGDAWKALAGSAIGYAMDGFDLLILGFMLPAISAALAL
TPGESGALVTWTLVGAVAGGILFGALSDAYGRVRVLTWTIVLFAVFTGMCAFAQGFTDLL
IYRTIAGIGLGGEFGIGMALAAEAWPAHKRARVSSYVALGWQCGVLLAALLTPLLLPFIG
WRGMFLLGVLPAAVAWFIRNRLHEPELFVRHAHAPRGKTSAFRLLVSDARTLRTSLGIVI
LCAVQNFGYYGIMIWLPTYLGKTLGFSLTKSALWTSVTILGMMLGIVAFGHLADRIGRKP
TFLIFQAGAVAMVLTYARLTDPLALLWAGAVMGMFVNGMIGGYGALISEAFPTAARATAQ
NVLFNLGRAVGGFGPVVVGSLAAAYSFRTAIALLAGLYVLDMLATMALVPERKGAELA