Protein Info for RS_RS20615 in Ralstonia solanacearum GMI1000

Annotation: sterol desaturase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 transmembrane" amino acids 46 to 72 (27 residues), see Phobius details amino acids 92 to 111 (20 residues), see Phobius details amino acids 118 to 137 (20 residues), see Phobius details amino acids 148 to 167 (20 residues), see Phobius details amino acids 188 to 209 (22 residues), see Phobius details amino acids 228 to 247 (20 residues), see Phobius details amino acids 281 to 300 (20 residues), see Phobius details PF04116: FA_hydroxylase" amino acids 235 to 368 (134 residues), 105 bits, see alignment E=2.2e-34

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RS01698)

Predicted SEED Role

"Sterol desaturase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XRV1 at UniProt or InterPro

Protein Sequence (410 amino acids)

>RS_RS20615 sterol desaturase family protein (Ralstonia solanacearum GMI1000)
MTQQPQPSTTPPEPTGQEHQPALLRVADATVRDANQLLNSNGSLVFGNGLIATILSLVLG
FLCLLGVMAFHFPQYLTTPELRHAYSVDVMRQILFFSLLVSGGLALANIVLDNRRRLNAL
AFAFVLAAVALGGSRVQVGNFPDHTPYIGLDWFILDLLGSTVIFVLLEKLFPLYKKQPVF
RPEWQTDMVHFAVNHFIVGLVLLVVNFLIHRVFGWMVNAGFQQMVQQIWFVPQLLLCMLV
ADLMEYVTHRAYHEVPFLWRFHAVHHSVKTMDWLAGSRQHILELIVTRVAVLGPLFVLGF
DKSVVDTYIIIVGFQAVFNHANVHLPWGPLKYIFVTPDFHHWHHSSENEAIDKNYAAHFA
FIDYLFGTAVKSKKAFPEKYGVVGDYMPDGFVNQQRFPFRRTPTHPATPT