Protein Info for RS_RS20550 in Ralstonia solanacearum GMI1000

Annotation: D-amino-acid transaminase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 PF01063: Aminotran_4" amino acids 31 to 254 (224 residues), 155.3 bits, see alignment E=1.1e-49

Best Hits

KEGG orthology group: K00824, D-alanine transaminase [EC: 2.6.1.21] (inferred from 100% identity to rso:RS01735)

Predicted SEED Role

"D-alanine aminotransferase (EC 2.6.1.21)" in subsystem Pyruvate Alanine Serine Interconversions (EC 2.6.1.21)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.6.1.21

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XRW7 at UniProt or InterPro

Protein Sequence (290 amino acids)

>RS_RS20550 D-amino-acid transaminase (Ralstonia solanacearum GMI1000)
MSRIVFLNGQYVPAAEATVSIMDRGFTFADGIYEVTAVARGKLVDNDAHLARLTRSLSEI
GIDNPYTDAEWTRVCEALIARNGLEEGVVYMQVTRGAAERDFGIPAQIAPTAVAFTQVKS
IVDSPLARKGAAVVTVPDLRWKRCDIKSVGLLPQVMAKQVAARAGASEAWMTDGDRVTEG
ASSTAFIITTDKRLITRPLSNAVLPGITRVSVMALAREHGLVLEERTFTVQEAQQAAEAF
FTSASTFVMPVISIDGVPVGDGQPGPLTRALRTLYLRFAGVETAEPAEQL