Protein Info for RS_RS20540 in Ralstonia solanacearum GMI1000

Annotation: DUF1326 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 PF07040: DUF1326" amino acids 11 to 190 (180 residues), 196.9 bits, see alignment E=1.6e-62

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RS01737)

Predicted SEED Role

"miscellaneous; hypothetical/partial homology"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XRW9 at UniProt or InterPro

Protein Sequence (200 amino acids)

>RS_RS20540 DUF1326 domain-containing protein (Ralstonia solanacearum GMI1000)
MSYQLEGRLLEVCNCRVLCPCWIGEDPDFGTCDTIVAWHMDQGTIDDVDVAGTTIAAVAH
VPGNILEGNWTAAIYINDTASDAQEKALLKVYTGEAGGPIADLVKLIGKVVSVERAPITF
DIVGAKGTLKIGTDYHAELEPYVGPSGAQTTLSDTVFSTVPGAPVFVGKAPVYRSKNATI
GIDVNLKNHNALQSTFRFEA