Protein Info for RS_RS20015 in Ralstonia solanacearum GMI1000

Annotation: phenylacetate-CoA oxygenase subunit PaaI

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 PF05138: PaaA_PaaC" amino acids 3 to 268 (266 residues), 307.6 bits, see alignment E=3.1e-96 TIGR02158: phenylacetate-CoA oxygenase, PaaI subunit" amino acids 15 to 268 (254 residues), 273.8 bits, see alignment E=7.4e-86

Best Hits

KEGG orthology group: K02611, phenylacetic acid degradation protein (inferred from 100% identity to rso:RSp0606)

Predicted SEED Role

"Phenylacetate-CoA oxygenase, PaaI subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XS75 at UniProt or InterPro

Protein Sequence (268 amino acids)

>RS_RS20015 phenylacetate-CoA oxygenase subunit PaaI (Ralstonia solanacearum GMI1000)
MQSTNDAHLRYVLRLADSALILGQRNAEWTGHGPVLEEDIALSNLSLDLIGQARLLYTHA
GRLEGKLTGMPRSEDDYAYWRDEPAFRNYTLLELPHAGPLCGTAAGSRDYAVTIVRHFLY
AALMVPLWEALAASADAELAAIAAKSVKEMRYHLAHTLDWLVRFGDGTAQSHARAQAALD
WLMPYTNEFFAADAVEEAVAEAGIGVRPAQVRGAWEATVRDTLDEATLTWPDAGPYVSTG
KHGIHSEHMGYLLAEMQGLARQFPGATW