Protein Info for RS_RS19400 in Ralstonia solanacearum GMI1000

Annotation: type II secretion system F family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 397 transmembrane" amino acids 164 to 186 (23 residues), see Phobius details amino acids 218 to 237 (20 residues), see Phobius details amino acids 369 to 390 (22 residues), see Phobius details PF00482: T2SSF" amino acids 67 to 187 (121 residues), 86.9 bits, see alignment E=5.4e-29 amino acids 268 to 389 (122 residues), 73.2 bits, see alignment E=9.3e-25

Best Hits

KEGG orthology group: K02455, general secretion pathway protein F (inferred from 100% identity to rso:RS00345)

Predicted SEED Role

"Predicted secretion system X protein GspF-like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XSK5 at UniProt or InterPro

Protein Sequence (397 amino acids)

>RS_RS19400 type II secretion system F family protein (Ralstonia solanacearum GMI1000)
MRFKVSTFHPDTARVSTRTVAAEDRASVETRLKAEGVMVLSVEPIENKLARSLQSRRRKV
DAGLVCIELGGLLRAGLTVSEALDSLAHRDDHPNVGVYRQLYDGLLSGLPLSESMKQVEG
GFPGILVAAIQANERSGRIPDALDEYAKYAQAQEALRKKVVSAAVYPATVIGFGLLVVLF
LLAYVIPRFAMVYDGTAMQMSGPTRILLAVGHFIHDRGWGLLVGIALLGVIVADQFARRN
AAQRLLNVIGGLWPFKKLGERFQQARICASLAMLTRGGYDFPEAMRLASPLAISASTRAQ
LDAARERILEGVLVSQALMKTDFSDGFAVRILQAGERVGDLAGSFEMLAQTYRRELETML
ERTMRLVEPILLMTVASLIGAIVVLMYLPIFDLAGAI