Protein Info for RS_RS19180 in Ralstonia solanacearum GMI1000

Annotation: siderophore biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 629 PF04183: IucA_IucC" amino acids 159 to 396 (238 residues), 149.9 bits, see alignment E=9.2e-48 PF06276: FhuF" amino acids 435 to 593 (159 residues), 67.2 bits, see alignment E=2.5e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RS00876)

Predicted SEED Role

"Siderophore staphylobactin biosynthesis protein SbnC @ Siderophore synthetase superfamily, group B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XSP8 at UniProt or InterPro

Protein Sequence (629 amino acids)

>RS_RS19180 siderophore biosynthesis protein (Ralstonia solanacearum GMI1000)
MTHVEERPEAPDTAAEGPAGFADRIDRVLAQDLLDALWLEDLYGFRGRATWRTDAAGEAV
LSVPVADGAALRWRGARLSGMRALRLSQDGAAVALQHAATCRPLRAVQTLDALQHAPWWP
AYSERLAQQLAVAQHQMARTFAAEAALLARVAAAPRSLAAWEAVCCLRDRPFHPLARAKV
WPDLPGEAFEVESGRSVPLHWVAVARDALFSGDGAAGADEGRYAAQPVAAALLSEDDYDG
LARRAVERCTDPAALWLPVHPWQWRYLQRNRVALALQCVDLGSGPGAAMPTASLRTLSVA
DGERLHLKLALNVQALGAARTLPPRYLRNGVLAERCLEALRARDAWLGAHLALCGEGAWW
ALGNAASLIESQGELACMLRHYPAHDGWLLPMAACAAVTLDGRLPALEALCGDTALQTLA
GSVPDAPAERAWRVFGRIAHLLIELGLRCFAHGVMPELHGQNVMLRIGADGLQGLVLRDH
DTLRICPVLMAAAGVEAPDYAIDRSTPNTLILDAPEALLAYFQTLAVEVNLYAILAALAE
RYGADESIGWRIVGRTLRESVDRVFGEGGAAALHGCVAQALFDAPQWPFKQILAPLAARA
SIGTGMPSGLGTIANPLRQVEPPQEVPRR