Protein Info for RS_RS18965 in Ralstonia solanacearum GMI1000

Annotation: flagellar biosynthetic protein FliO

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 130 transmembrane" amino acids 7 to 28 (22 residues), see Phobius details TIGR03500: flagellar biosynthetic protein FliO" amino acids 14 to 86 (73 residues), 80.2 bits, see alignment E=4.4e-27 PF04347: FliO" amino acids 26 to 118 (93 residues), 77.8 bits, see alignment E=2.9e-26

Best Hits

KEGG orthology group: K02418, flagellar protein FliO/FliZ (inferred from 100% identity to rso:RSp0376)

Predicted SEED Role

"Flagellar biosynthesis protein FliQ" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XSU1 at UniProt or InterPro

Protein Sequence (130 amino acids)

>RS_RS18965 flagellar biosynthetic protein FliO (Ralstonia solanacearum GMI1000)
MNHAVDWARTFGGLLIVLAMIVAAGWLLRKLQQRAGMGPAGRRSQVLSVVAQQMLGAREK
VVVVEVQGTWLVLGVTQQHVQTLHTLPRPADAGAPVADDPPTHDTHGGKPPAFADALALQ
IKRRLTGKPQ