Protein Info for RS_RS18620 in Ralstonia solanacearum GMI1000

Annotation: DUF561 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF03060: NMO
  • amino acids 8 to 344 (337 residues), 249.9 bits, E=7e-78
• PF04481: DUF561
  • amino acids 155 to 244 (90 residues), 25.4 bits, E=1.1e-09

Best Hits

KEGG orthology group: K00459, nitronate monooxygenase [EC: 1.13.12.16] (inferred from 100% identity to rso:RS05464)

Predicted SEED Role

"Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9)" in subsystem Fatty Acid Biosynthesis FASII (EC 1.3.1.9)

MetaCyc Pathways

• superpathway of fatty acids biosynthesis (E. coli) (50/53 steps found)
• superpathway of fatty acid biosynthesis II (plant) (38/43 steps found)
• palmitate biosynthesis II (type II fatty acid synthase) (29/31 steps found)
• anteiso-branched-chain fatty acid biosynthesis (30/34 steps found)
• even iso-branched-chain fatty acid biosynthesis (30/34 steps found)
• odd iso-branched-chain fatty acid biosynthesis (30/34 steps found)
• superpathway of unsaturated fatty acids biosynthesis (E. coli) (19/20 steps found)
• oleate biosynthesis IV (anaerobic) (13/14 steps found)
• palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) (9/9 steps found)
• superpathway of fatty acid biosynthesis I (E. coli) (14/16 steps found)
• biotin biosynthesis I (13/15 steps found)
• cis-vaccenate biosynthesis (5/5 steps found)
• fatty acid elongation -- saturated (5/5 steps found)
• gondoate biosynthesis (anaerobic) (4/4 steps found)
• 8-amino-7-oxononanoate biosynthesis I (9/11 steps found)
• (5Z)-dodecenoate biosynthesis I (5/6 steps found)
• stearate biosynthesis II (bacteria and plants) (5/6 steps found)
• alkylnitronates degradation (2/2 steps found)
• 8-amino-7-oxononanoate biosynthesis IV (4/5 steps found)
• (5Z)-dodecenoate biosynthesis II (4/6 steps found)
• streptorubin B biosynthesis (20/34 steps found)
• mycolate biosynthesis (25/205 steps found)
• superpathway of mycolate biosynthesis (26/239 steps found)

KEGG Metabolic Maps

• Fatty acid biosynthesis
• Nitrogen metabolism

Isozymes

Compare fitness of predicted isozymes for: 1.13.12.16, 1.3.1.9

Use Curated BLAST to search for 1.13.12.16 or 1.3.1.9

Sequence Analysis Tools

See Q8XT10 at UniProt or InterPro

Protein Sequence (362 amino acids)

>RS_RS18620 DUF561 domain-containing protein (Ralstonia solanacearum GMI1000)
MGTWPDTRLLALFQIDVPIVLAPLAGVGGVELAVAVARAGGLGSLPCAMLNADQIREQVG
QFRAAVRAPINLNFFCHVPPQPDPEREARWRAHLAPYYAEFGIDPAATAPFVNRAPFDAA
ACAVVESLRPEVVSFHFGLPEAGLLARVRAAGARILASATTVEEACWLEANGCDAVIAQG
AEAGGHRGMFLATAVESQVGTFALVPQVADAVRVPVIATGGVADARGMAAAFALGAAGVQ
IGTAYMLSPEAKTSAIHRAALKRAADGDTALTNLFTGRPARGIVNRLMREIGPMSSFAPA
FPTAGGALAPLRAKTEPAGSGDFINLWSGQAPRLATEDSAEAITRRIAAQALARLAPATR
LA