Protein Info for RS_RS18480 in Ralstonia solanacearum GMI1000

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF00704: Glyco_hydro_18
  • amino acids 98 to 364 (267 residues), 35.6 bits, E=9.3e-13
• PF02839: CBM_5_12
  • amino acids 361 to 398 (38 residues), 36.7 bits, 3.4e-13

Best Hits

KEGG orthology group: K01183, chitinase [EC: 3.2.1.14] (inferred from 100% identity to rso:RS03689)

Predicted SEED Role

"Chitinase (EC 3.2.1.14)" in subsystem Chitin and N-acetylglucosamine utilization (EC 3.2.1.14)

MetaCyc Pathways

• chitin degradation II (Vibrio) (3/6 steps found)
• chitin degradation III (Serratia) (3/7 steps found)
• chitin degradation I (archaea) (1/7 steps found)

KEGG Metabolic Maps

• Aminosugars metabolism
• Nucleotide sugars metabolism

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.1.14

Sequence Analysis Tools

See Q8XT40 at UniProt or InterPro

Protein Sequence (401 amino acids)

>RS_RS18480 membrane protein (Ralstonia solanacearum GMI1000)
MKPRVSPRFATRAVAALCLSAAAGASHAAGVYAPYIDMTLDPTPLIDQIGVRQGIQQFHL
AFVIAGDGCTPSWGGIQAIGNGASGDLLTTIAASITRYRARGGEVSVSFGGAAGTPLMKA
CTTVPALKAAYQTVIDTYQLTHVDFDIEGSVQKDTEAVARNFQAIAQLQSDFAAKGRALH
VTLTLPVLPSGLVQDGINTLNAAIANKVALDTVNVMTMDYGPADIDMGAAAISAAQGLYA
QLDTAYKVVGQVKTDAQLWRLVGVTPMIGMNDVQSETFTLPNALTVLGAAYGNGYGMVSN
WSVGRDQACPDNGAVVSPTCSGIVQRPYAFASIFRQLHGHWGTGVLRDPSYGNATGGSAP
AWSATAVYRIGQCVTYQDAKYCARWWTQGNVPNAGGVWAKS