Protein Info for RS_RS18105 in Ralstonia solanacearum GMI1000
Annotation: aspartate aminotransferase family protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K00837, [EC: 2.6.1.-] (inferred from 100% identity to rso:RS04713)Predicted SEED Role
"Putrescine aminotransferase (EC 2.6.1.82)" in subsystem Arginine and Ornithine Degradation (EC 2.6.1.82)
MetaCyc Pathways
- putrescine degradation I (2/2 steps found)
- L-lysine degradation X (4/6 steps found)
- superpathway of ornithine degradation (4/8 steps found)
- L-lysine degradation I (3/7 steps found)
- superpathway of L-arginine and L-ornithine degradation (7/13 steps found)
- superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation (5/11 steps found)
- superpathway of L-lysine degradation (9/43 steps found)
KEGG Metabolic Maps
- Aminophosphonate metabolism
- Arginine and proline metabolism
- Caprolactam degradation
- Lysine biosynthesis
- Lysine degradation
- Methionine metabolism
- Nucleotide sugars metabolism
- Urea cycle and metabolism of amino groups
Isozymes
Compare fitness of predicted isozymes for: 2.6.1.-
Use Curated BLAST to search for 2.6.1.- or 2.6.1.82
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q8XTB3 at UniProt or InterPro
Protein Sequence (836 amino acids)
>RS_RS18105 aspartate aminotransferase family protein (Ralstonia solanacearum GMI1000) MKFGFIAHPTSVALKRHVKIVDLLERTIAEQDRGYRDDRWQWRNLVPFADFGRIVSAQGA VCEGILHYMPLTAEEMLSQPRAIAQRVVDAVESLKDQGAQVVGLGGFTAIVGNRGLQTLE RTGIPVTTGNSLTAYAAYRNVLESMDRLGVEPADTEVAVVGYPGSIALVIAKLLAGHGCR LCLVHRGSEAQGRQGLAYLPEPMHAQVRLSNDIEHCYEHVQFYVAATSTGGLIDPYRLRP GSVVVDAALPRDVKPYRKDRNDILIIDGGLVSASSALRFGAESMGLAPKKFLNGCLAETL ILGLEGRAEAFSIGRELPEDKVLEIGRIAELHGFSPSPMASYGEPVKDRHFAALRPFHRP RTQSPAGLEGESLREHALRSFGEHINPILRDFYAFNHIERVFQHGRGCTLTDINGQAFLD FVAGYGCLNTGHNHPRIKAALLDYLQREHPTFVQYVSVPLQTSQLAQRLSELAPGRMERV FFSNSGTEAVEAALKLALAAMSKPRVLYCDNGYHGKTLGALSVTGRDKHRTPFKPLLPRC DAIPFGDADALEAALQTGDVGAFIVEPIQGEGGVIIPPDGYLAKVRQLCSAYDCILILDE IQTGLGRTGKMFACEWEGVEPDILILSKSLSGGAVPIGATLSRKAIWDRAYGNIDTFALH TSTFGGGNLAAAAGLATLDVLAEEDLAGNAARVGESLRHQLTAATRDYPFIREVRGRGLM IAIEFRHSYAGGIEAFIREFANRMPGDAAATYRMLSGKARQHIRAAIEEVEKSFEEMFVL RFVTKLSQEYGILTFVTANNNRVMRIQPPLVLNEDQAQSFVDAFARVCHDMSTFLD