Protein Info for RS_RS17610 in Ralstonia solanacearum GMI1000

Annotation: recombinase XerC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 347 PF13495: Phage_int_SAM_4" amino acids 23 to 109 (87 residues), 31.5 bits, see alignment E=1.9e-11 PF00589: Phage_integrase" amino acids 135 to 305 (171 residues), 137.7 bits, see alignment E=3.5e-44

Best Hits

Swiss-Prot: 100% identical to XERC2_RALSO: Tyrosine recombinase XerC 2 (xerC2) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: None (inferred from 100% identity to rso:RS05531)

Predicted SEED Role

"Tyrosine recombinase XerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XTL6 at UniProt or InterPro

Protein Sequence (347 amino acids)

>RS_RS17610 recombinase XerC (Ralstonia solanacearum GMI1000)
MKPAGPRKRAVDPLAHLVLTRYMEAHFEALLVTGYSADTVRARRISIRRFIVWCEERGIA
QPADVTRAVLERYQRHLFYYRKPNGAPLTLGSQHGALAPLKTWFKWLARENHILYNPASE
LDLPKLPKHLPRAILSVQEVEAILAEADPATPYGLRDRAMLELLYSTGIRRMEVAGLALY
DVDATRRLAFVRDGKGAKDRVVPVGVRALAWLDRYLLEARPQLIVAEREALFVTDYGEPV
SPEYVASRVKRYMEFAGIQKPGATHLLRHAMATHMLEAGADVRVLQALLGHAQLNTTEIY
THVSIEHLRAIHDATHPARLQREDVLAADATDAARQALADALDRDEG