Protein Info for RS_RS17480 in Ralstonia solanacearum GMI1000

Annotation: DUF3483 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 641 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 31 to 49 (19 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 99 to 116 (18 residues), see Phobius details amino acids 136 to 155 (20 residues), see Phobius details amino acids 161 to 182 (22 residues), see Phobius details PF11982: DUF3483" amino acids 6 to 211 (206 residues), 270.5 bits, see alignment E=4e-84 PF13237: Fer4_10" amino acids 251 to 339 (89 residues), 38.9 bits, see alignment E=2.3e-13 PF13183: Fer4_8" amino acids 251 to 340 (90 residues), 36.2 bits, see alignment E=2.5e-12 PF13187: Fer4_9" amino acids 253 to 340 (88 residues), 29.3 bits, see alignment E=2.5e-10 PF02754: CCG" amino acids 417 to 486 (70 residues), 12.9 bits, see alignment E=3.4e-05 amino acids 534 to 619 (86 residues), 54.6 bits, see alignment E=3.4e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RS02034)

Predicted SEED Role

"Iron-sulfur cluster-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XTP7 at UniProt or InterPro

Protein Sequence (641 amino acids)

>RS_RS17480 DUF3483 domain-containing protein (Ralstonia solanacearum GMI1000)
MNPAFLITALLWLSVAGLVFAVAKRASYWRLGRATAPGAFGIANLFTIPKRYFVDLHHVV
ARDPYIAKTHVATAGGAIAALALVFVNYGFAIYSPWLDKLIFIAALAMLIGAVFVWRRRA
AKDVPARLSRGPWNTLPWLLGSFALGLVLFVVVPAGAMSGAFAVLCALLIGIGAFAMTFG
AAKGGPMKHAMAGLLHLAFHPRQERFAGTPEAFTGGGTATPPTALKLPDIAHQEYGVAKP
VEFRWNQLLSFDACVQCGKCEAACPAFASGQPLNPKKLIQDLVVGMAGGTDAAYAGSPTP
GIAVGQHRGEPNGSIVSGLIEAQTLWSCTTCRACVQECPMLIEHVDAIVDMRRNQTLVHG
TVPGKGPEVLANLRETGTMGGYDTAARYDWSVDLNAPIAQAGKPVDVLFVAGEGAFEMRY
QRTLRAFVKVLNKAGVDYAVLGNVETDTGDIARRLGDEATFQQMAKRLIGTLSTLSYKQI
VTADPHVMHSLRNEYRALGLRVTVKHHTTYLAELAASGKITPKAVDALREKRTTYHDPCY
LGRYNGETDAPRKLLKTIGIQVVEMERNGMRGRCCGGGGGAPLTDIPGKQRIPDIRIADA
RAVNAEVVAVACPNCTAMLEGVVGPRPDVLDVAELVAASLE