Protein Info for RS_RS16060 in Ralstonia solanacearum GMI1000

Annotation: AcrB/AcrD/AcrF family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1040 signal peptide" amino acids 1 to 41 (41 residues), see Phobius details transmembrane" amino acids 339 to 357 (19 residues), see Phobius details amino acids 364 to 384 (21 residues), see Phobius details amino acids 391 to 415 (25 residues), see Phobius details amino acids 430 to 452 (23 residues), see Phobius details amino acids 467 to 490 (24 residues), see Phobius details amino acids 528 to 548 (21 residues), see Phobius details amino acids 861 to 879 (19 residues), see Phobius details amino acids 886 to 908 (23 residues), see Phobius details amino acids 914 to 935 (22 residues), see Phobius details amino acids 963 to 983 (21 residues), see Phobius details amino acids 988 to 1011 (24 residues), see Phobius details PF00873: ACR_tran" amino acids 9 to 1010 (1002 residues), 511.1 bits, see alignment E=2.9e-157

Best Hits

KEGG orthology group: None (inferred from 88% identity to bcm:Bcenmc03_6138)

Predicted SEED Role

"Cation efflux system protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XUI3 at UniProt or InterPro

Protein Sequence (1040 amino acids)

>RS_RS16060 AcrB/AcrD/AcrF family protein (Ralstonia solanacearum GMI1000)
MSQGRFNLSALAVRERAVTLFLICLISLAGLISFFKLGRAEDPAFTVKVMTIITAWPGAT
AQEMQDQVAEKIEKRIQELRWYDRTETYTRPGLAFTTLTLLDSTPPSEVQEEFYQARKKV
SDEVANLPPGVIGPMVNDEYADVTFALFALKAQGEPQRVLVRDAETLRQRLLHVPGVKKV
NIIGEQSERIYVEFSHDRLATLGVSPQEVFAALNNQNALTAAGSVETKGPQVFIRLDGAF
DELQKIRDTPVVSQGRTLKLSDIATVKRGYEDPATFMVRNGGQPALLLGIVMREGWNGLD
LGKALDKEVGAINADMPLGMSLTKVTDQAVNISAAVDEFMLKFFAALLVVMLVSFVSMGW
RAGLVVAAAVPLTLAVVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEE
GYSRVAASAYAWSHTAAPMLSGTLVTAVGFMPNGFARSTAGEYTSNMFWIVGIALIASWV
VAVVFTPYLGVKMLPDFKKVEGGHDAIYDTPRYNRFRALLGRVIARKWLVAGSVVGLFAL
AILGMAVVKKQFFPISDRPEVLVEVQMPYGTSINQTSAATAKLEAWLAKQKEAQIVTSYV
GQGAPRFYLAMGPELPDSSFAKIVIRTDSQEERDALKQRLRQAIADGLAPEARVRVTQLV
FGPYSPFPVAYRVTGPDAETLRRIAADVRQVMDASPMMRTVNTDWGMRVPTLHFTLQQDR
LQAVGLTSSAVAQQLQFLLNGIPVTAVREDIRTVQVTARSAGDIRLDPAKIGDFTLAGAN
GQRVPLSQVGKIDVRMEEPIIRRRDRMPTITVRGDIADGLQPPDVSTALSKQLQPIIEKL
PSGYRIEQAGSIEESGKATKAMLPLFPIMLAVTLLILIFQVRSIPAMVMVFLTSPLGLIG
VVPTLILFGQPFGINALVGLIALSGILMRNTLILIGQIQHNKEEGLDPFTAVVEATVQRA
RPVILTALAAILAFIPLTHSVFWGALAYTLIGGTFAGTILTLVFLPAMYSIWFRIRPNNA
ADAQRDRQEQVQPTGQLVPE