Protein Info for RS_RS14850 in Ralstonia solanacearum GMI1000

Annotation: tripartite tricarboxylate transporter substrate binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 344 signal peptide" amino acids 1 to 42 (42 residues), see Phobius details PF03401: TctC" amino acids 67 to 337 (271 residues), 185.2 bits, see alignment E=7e-59

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc2963)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XV68 at UniProt or InterPro

Protein Sequence (344 amino acids)

>RS_RS14850 tripartite tricarboxylate transporter substrate binding protein (Ralstonia solanacearum GMI1000)
MRADVRTPLADPYDMARPGRRRTLAVLGAMPVLLTAWPARGELLGYPSHAMRLVVPAAEG
SAFDALARALAAQLAGQLGMAASVDDRPAANGMAAGELVARAPSDGHTWLLQQTTFVAQP
ALEPAPYDPLRDFQPVAMVATLPLFLAIDARLPVASIGELVAQARVQSASVNCGSEAVGT
WSHLVAEQFVRDYAIHAPHVTVKGEGVLIQQLLAGRMTACFATYPSLAAGVSAGQLRLLG
VTGSARSPFAPAVPTLREAGVAGFDRSAWVGVFAPARTPRPLSLRVAAELKQVLVSGDVR
ATMLAGGYQPEWEAAESFAAAVRRDAVHWQSLIREADLQLEERG