Protein Info for RS_RS14745 in Ralstonia solanacearum GMI1000

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 124 transmembrane" amino acids 26 to 51 (26 residues), see Phobius details amino acids 72 to 105 (34 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 98% identity to rsc:RCFBP_10508)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XV88 at UniProt or InterPro

Protein Sequence (124 amino acids)

>RS_RS14745 membrane protein (Ralstonia solanacearum GMI1000)
MDKYGSAMALTDDAERLAGLRRLTHILYALYAIFWLTGGITALIAIIVGYVKRDDVRGTL
YESHFRWQIRSFWWCVLWGVIGVLLIPLAFLGFAVLWALGIWMLYRIVKGWLYLNDSKPM
YANP