Protein Info for RS_RS14065 in Ralstonia solanacearum GMI1000

Annotation: MarC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 197 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 41 to 63 (23 residues), see Phobius details amino acids 71 to 90 (20 residues), see Phobius details amino acids 105 to 128 (24 residues), see Phobius details amino acids 134 to 155 (22 residues), see Phobius details amino acids 173 to 194 (22 residues), see Phobius details PF01914: MarC" amino acids 5 to 192 (188 residues), 170.7 bits, see alignment E=1.4e-54 TIGR00427: membrane protein, MarC family" amino acids 8 to 190 (183 residues), 105.7 bits, see alignment E=1.4e-34

Best Hits

Swiss-Prot: 47% identical to Y434_BUCAP: UPF0056 membrane protein BUsg_434 (BUsg_434) from Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_0694)

Predicted SEED Role

"Multiple antibiotic resistance (MarC) -related proteins"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XVL7 at UniProt or InterPro

Protein Sequence (197 amino acids)

>RS_RS14065 MarC family protein (Ralstonia solanacearum GMI1000)
MEYTFASATVLLLLITDPLGNIPIFISALRPVAPERRNRVVLREVGIAFALLLVFMFFGE
AFLRMMSLTDLSLQIAGGIVLFLIALRMIFPREGPADGQLTGEPFIVPLAIPAIAGPSAL
ATVMLLVSQAPGRMWTWIGSLSATMAVCAVVLLSATRIQRLVGERTVMAFERLMGLILVA
ISVEMLLKGIRAFVHQL