Protein Info for RS_RS13950 in Ralstonia solanacearum GMI1000

Annotation: DUF3426 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 473 transmembrane" amino acids 317 to 337 (21 residues), see Phobius details TIGR02098: MJ0042 family finger-like domain" amino acids 8 to 43 (36 residues), 58.3 bits, see alignment 2.2e-20 PF13719: zinc_ribbon_5" amino acids 9 to 42 (34 residues), 48.8 bits, see alignment (E = 7.3e-17) PF13717: zinc_ribbon_4" amino acids 10 to 41 (32 residues), 40.5 bits, see alignment (E = 3.2e-14) PF11906: DUF3426" amino acids 323 to 469 (147 residues), 138.7 bits, see alignment E=2.4e-44

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc2789)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XVP1 at UniProt or InterPro

Protein Sequence (473 amino acids)

>RS_RS13950 DUF3426 domain-containing protein (Ralstonia solanacearum GMI1000)
MASAPRLAARCPACHTAFRVVADQLRLRGGLVRCGRCNHVFDGRAHLIELDTSSGESAAQ
AAAPQPPERHEPVSAAAPAAAEPHPAEPASADEDDHGFGITLTWEEEIAEVHLGEVEGAE
ADPGTQPTAPDTRSPAAPTTPAAPAAQAEPPKAKPSTPAEAEPVAAQPETPVEPPAPADP
FHGLPPLLNLDDDEDNFAAAVPVRPSAEPVAAPSSLPEPPAKATQAPAPAAAERHDSTWL
RREADPHTLFAPVPRRQGRRAPEAEAHAEPIPQRTVTGAPRPRKMRGPNHGVSAATLDFL
RAAQAREQQRKSSGRRAVARVAIGLLVVTAVAQLLFLGRTEIATRVPATRALWDRLCQPL
HCDVPPPRDLDALQIESSQMLRQEGDASDQYVLTATLRNGSDGPVALPAIELVTTDLQDQ
LLARRALLPTDYLGPADAAYRKTGLAAHAELPIRVRFQSQRPTANYRVLIFYP