Protein Info for RS_RS13485 in Ralstonia solanacearum GMI1000

Annotation: fimbrial biogenesis outer membrane usher protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 754 transmembrane" amino acids 356 to 374 (19 residues), see Phobius details amino acids 428 to 446 (19 residues), see Phobius details PF00577: Usher" amino acids 170 to 377 (208 residues), 57.7 bits, see alignment E=1e-19 amino acids 438 to 656 (219 residues), 67.8 bits, see alignment E=9.4e-23 PF13953: PapC_C" amino acids 674 to 733 (60 residues), 55.3 bits, see alignment 4.8e-19

Best Hits

KEGG orthology group: K07347, outer membrane usher protein (inferred from 100% identity to rso:RSc2693)

Predicted SEED Role

"Sigma-fimbriae usher protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XVY2 at UniProt or InterPro

Protein Sequence (754 amino acids)

>RS_RS13485 fimbrial biogenesis outer membrane usher protein (Ralstonia solanacearum GMI1000)
MTLANDAPAPSRTAASDVAELLLQFDLNQQGLDDTVLLLKTKGGELYASAEDLKRWRLRQ
PEATPLAHNNEVFYPLKAITGLSYQLDETLLTVAVTAPAQAFLPNAFDEANKPVALSLKP
GFGGFLNYDLLAEHATGQTRSSGLFEAGVFNGLGVGVASFVANSGDTEHRLIRLETTWTK
DLPDHLSSVRLGDSISRAGAWGRSVRFGGIQYSTNFAVQPGFVALPLQSIGGQAALPSTV
DVYVNNVLSSRKDVAPGPFSITNVPVVTGQGDVRVVVRDLLGREQVISVPFYASASLLAK
GLHDFSYEAGAERRNFGTDSNDYGRAFAAATHRLGFTDWLTGEVHAESQLERQTVGLGTV
MLAPSVGVFSAAAAASRGRQGSGGLVSVGFERQASPVSVGVHAQLASPRFTQLGLELDMP
APRLLSSVNVGMALPGGGSLGLAYVYLDNRDGHPTQLASASYGTQLGRFGFISLALSKTL
HQPGGLMVGLNWTLPLGERTTTSINMTQQQGRTEVQAQVQQGLPPGDGFGYSVRASQLGA
WDAALNAQNRVGTYLLEAAGDRGQTGVRMGASGGIAILDGLHLSRRISDSFAVVKVPDFP
NVRIYADNQLVAKTNASGEALIPRLRAYEKNAISLEQLDLPFDAKVGTLSLDAVPYYRSG
MVLDFPVTHAHDALMTLKLENGSDLPAGATVQISGQKEAFPVGNDGVVYLTGLAAQNRLQ
ANWRGQSCDISVPFTPGADPLPDLGIFVCKGVRP