Protein Info for RS_RS13195 in Ralstonia solanacearum GMI1000
Annotation: aminodeoxychorismate synthase component I
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K03342, para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC: 2.6.1.85 4.1.3.38] (inferred from 100% identity to rso:RSc2633)Predicted SEED Role
"Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) / Aminodeoxychorismate lyase (EC 4.1.3.38)" in subsystem Chorismate: Intermediate for synthesis of PAPA antibiotics, PABA, anthranilate, 3-hydroxyanthranilate and more. or Folate Biosynthesis (EC 2.6.1.85, EC 4.1.3.38)
MetaCyc Pathways
- superpathway of tetrahydrofolate biosynthesis and salvage (11/12 steps found)
- L-citrulline biosynthesis (8/8 steps found)
- L-glutamate and L-glutamine biosynthesis (7/7 steps found)
- superpathway of tetrahydrofolate biosynthesis (9/10 steps found)
- superpathway of L-citrulline metabolism (10/12 steps found)
- L-asparagine biosynthesis III (tRNA-dependent) (4/4 steps found)
- ammonia assimilation cycle III (3/3 steps found)
- superpathway of chorismate metabolism (43/59 steps found)
- 4-aminobenzoate biosynthesis I (2/2 steps found)
- L-glutamate biosynthesis I (2/2 steps found)
- L-glutamine degradation I (1/1 steps found)
- glutaminyl-tRNAgln biosynthesis via transamidation (3/4 steps found)
- 4-aminobenzoate biosynthesis II (1/2 steps found)
- superpathway of candicidin biosynthesis (3/11 steps found)
- chloramphenicol biosynthesis (1/9 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 2.6.1.85
Use Curated BLAST to search for 2.6.1.85 or 4.1.3.38
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q8XW42 at UniProt or InterPro
Protein Sequence (626 amino acids)
>RS_RS13195 aminodeoxychorismate synthase component I (Ralstonia solanacearum GMI1000) MPLPDAGAPFALLDDATSAGAPCSRWYTGYAGEIVRPPGTLAGLDDALRAAWADGLHALV LAPYEFGRPLVGLLSAMPASARLPGHDGCLRVLLFRSMQVLSAAEVDALFDAWPEAGSAA GLFDCAASVDHDAYVHAIARIQDWIAAGDTYEVNYTYRLRMTAFGAPAALYRRLRARQPV PYGALIGLPEGGAILSCSPELFFSHRAGTLVARPMKGTAPASGDPEVDQARAAALAADEK NRAENLMIVDLLRNDLGRLARPGSVRVPTLFEVTPYGSVLQMTSTVQAEIPPETGLADCL AALFPCGSITGAPKRRTMEIIDALEPQPRGFYTGAIGWIDAPSGDRAMGDACFSVAIRTL VLGAPGTDGLHSCELGIGSGIVHDSAADEEYAECRLKARFVTALDPDLSLFETMRATRAE GVPLLERHLARLAHSARAFGFGFDRDALVREVARACAALPEAGAHRMRLSLRHSGAFSVT AAPLPPLHASWNAPVRLRVAPQAREAAHSLPHHKTSLRAAYDAAWQAAEREGAFDAVFFN ADGTLAEGGRSTVLVKLEGRWWTPPLSAGVLPGVMRAVLLEDARPWLGAPLHERVLTRAD VVRAEAIAVCNALRGVVPAHFEPPVA