Protein Info for RS_RS11285 in Ralstonia solanacearum GMI1000

Annotation: branched-chain amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 37 to 55 (19 residues), see Phobius details amino acids 61 to 84 (24 residues), see Phobius details amino acids 96 to 115 (20 residues), see Phobius details amino acids 143 to 162 (20 residues), see Phobius details amino acids 182 to 205 (24 residues), see Phobius details amino acids 224 to 253 (30 residues), see Phobius details amino acids 260 to 261 (2 residues), see Phobius details amino acids 264 to 285 (22 residues), see Phobius details PF02653: BPD_transp_2" amino acids 8 to 277 (270 residues), 126.7 bits, see alignment E=4.8e-41

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 100% identity to rso:RSc2248)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XX68 at UniProt or InterPro

Protein Sequence (289 amino acids)

>RS_RS11285 branched-chain amino acid ABC transporter permease (Ralstonia solanacearum GMI1000)
MLSALGVLFDGLAYGCLLFLIGIGLSVTMGLMRFINLAHGAFAMAGGYVCVVLMNRLGMP
FLATLPIAFLATAAAGFVLERTLYRRLYRASPLDQVLFSIALVFMAMAGATYVWGPSQQP
VELPDALRGQLRVFDTGLEVGRYRLFLVGVVVVLTALLAWLIERTRFGARVRASVDNQQA
AAGLGINVGLVFSVTFALGSGLAGLGGGLGIDVLGLDPAFPIKYMVYFLLVVAVGGAGSI
KGTLLAALVLGVFDVAGKYYVPEVGAFVIYGLMVLLLALFPGGLLGRRA