Protein Info for RS_RS10175 in Ralstonia solanacearum GMI1000

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 transmembrane" amino acids 30 to 51 (22 residues), see Phobius details amino acids 57 to 75 (19 residues), see Phobius details amino acids 179 to 197 (19 residues), see Phobius details amino acids 203 to 224 (22 residues), see Phobius details PF00487: FA_desaturase" amino acids 64 to 294 (231 residues), 97 bits, see alignment E=8.4e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc2025)

Predicted SEED Role

"PROBABLE TRANSMEMBRANE PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XXT8 at UniProt or InterPro

Protein Sequence (313 amino acids)

>RS_RS10175 hypothetical protein (Ralstonia solanacearum GMI1000)
MAYKSIGYHSSMPKEKLASFRREFSARNHWLALLYVICVPASMLVGGYMAWSFSVDGSLG
AARWVMEAVVCIFFARQLRAMENIVHFGSHLNITSKRSVNDAIVNAVAAVPTFQWVQRYR
VFHNKHHVLFGGDDDPCKNRIEAINGIRDRVESRQLGLVSGIVYGIYSFYREVGSNRTIL
LYSLLYHAAAYFAMNALNPEFAGFFYGHLLVAGLLVLPCLRLVAEWSEHDYAASDTEAQA
TFNNCSFVDKLIFHPAGDAYHLLHHLYPAIPWWRQGAAHRYLMAEDYNYRTLMHRADFFQ
RLAIAQHDMSEAK