Protein Info for RS_RS10140 in Ralstonia solanacearum GMI1000

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 321 PF00126: HTH_1" amino acids 14 to 72 (59 residues), 66.2 bits, see alignment E=2e-22 PF03466: LysR_substrate" amino acids 102 to 304 (203 residues), 102.8 bits, see alignment E=1.8e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc2018)

Predicted SEED Role

"Transcriptional regulator, LysR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XXU5 at UniProt or InterPro

Protein Sequence (321 amino acids)

>RS_RS10140 LysR family transcriptional regulator (Ralstonia solanacearum GMI1000)
MPSINIVHISRVDLNLFVVFDAIYSEGGITAAARTLNLTQPAVSHALGRLRELFDDPLFE
RRGQGMVPTPLARTLVAEVRAALQGFERTLREGTRFDPAASERRFTLSMRDALEATLLPP
LMAAIAREAPRIDVTTVRGDRRQLEAELLAGTIDAAVDILLPVSPAIRHAPLLSDPMVVL
ARPGHPVTQGPLTLERYLAYEHVHVSSRRRGAGLEDVELRRLGRERRVRLRCQHYPAACR
VVSCTDLLVTLPVRYARIANAPYGNVMLPLPFKVPPLELYLYWHANSDQDAAGRWLRDHV
LAAMAGVAEDEAAAALAGRNA