Protein Info for RS_RS09840 in Ralstonia solanacearum GMI1000

Annotation: dicarboxylate/amino acid:cation symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 428 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 47 to 70 (24 residues), see Phobius details amino acids 84 to 106 (23 residues), see Phobius details amino acids 153 to 170 (18 residues), see Phobius details amino acids 199 to 224 (26 residues), see Phobius details amino acids 230 to 249 (20 residues), see Phobius details amino acids 302 to 376 (75 residues), see Phobius details PF00375: SDF" amino acids 6 to 403 (398 residues), 376.7 bits, see alignment E=6.8e-117

Best Hits

Swiss-Prot: 41% identical to DCTA_GEOBB: C4-dicarboxylate transport protein (dctA) from Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)

KEGG orthology group: None (inferred from 100% identity to rso:RSc1957)

Predicted SEED Role

"Proton/glutamate symport protein @ Sodium/glutamate symport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XY06 at UniProt or InterPro

Protein Sequence (428 amino acids)

>RS_RS09840 dicarboxylate/amino acid:cation symporter (Ralstonia solanacearum GMI1000)
MNTKRLTTHIGVAMLLGIAVGWGCHEYAKDAQAAKELASYFSIVTDIFLRMIKMIIAPLV
FSTLVTGLASMSGGRSVGRIGLRAMLWFVTASVISLALGMVLVNFFQPGMQLNMPLPDTA
AAVGLKTGDFTLKGFFTHVFPRSIVESMANNEILQILVFSLFFGAALASVEKPMETVVGR
GLEELTKLMFRITDYVMRFAPLGVFAAMAAAITVEGVGVLWTYGKLIGEFYLGLALLWMI
LFLVGYLLLGRSIGRLASLIREPILLAFATASSESAYPKTIEALDRFGVPKRISSFVLPL
GYSFNLDGSMMYQAFAVLFIAQAYNIEMGFTQQLTLLLVLMLTSKGMAGVARASLVVVAA
TLPMFHLPEAGLLLILGIDQFFDMGRTATNVIGNSIATAVVAKYEREDEVEAEAVQPAAA
QADIASAG