Protein Info for RS_RS09240 in Ralstonia solanacearum GMI1000

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 PF14525: AraC_binding_2" amino acids 42 to 218 (177 residues), 159 bits, see alignment E=1.5e-50 PF12833: HTH_18" amino acids 261 to 341 (81 residues), 79.8 bits, see alignment E=2.3e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc1832)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XYC6 at UniProt or InterPro

Protein Sequence (342 amino acids)

>RS_RS09240 AraC family transcriptional regulator (Ralstonia solanacearum GMI1000)
MLNTTPPLTVAQRPAGLSAALDPFPCTPERLLFASADLDEIRSMVGRVMKPHRLALVGGA
DRLDARMHYTPLGDISLSRLRYGAAVEIEPGPLDSFFLVQMPISGSAEVESGAQHIDSGP
DVASVLSPEEGTKMRWSAGNEQLMLRLSRSLVERTLVGHFGHPLEQPLRFELGFEWRGCA
QWRCLLSYLIDCSTQGLDLAQHKLVIAQIEQLAASVLLASHQHNYSEAAPSRRGTILPRH
VRRAQDYLQAHAHEPVCADQLAQVVGVSVRSLYTGFKEFLGVSPMHYLRDLRMERTRTEL
MSGEATNVAGVALRWGFAHMGRFSNDYKQRYGETPSQTLRRR