Protein Info for RS_RS09085 in Ralstonia solanacearum GMI1000

Annotation: GALA protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 PF13516: LRR_6" amino acids 129 to 151 (23 residues), 26.2 bits, see alignment (E = 1.1e-09) amino acids 153 to 174 (22 residues), 23.6 bits, see alignment (E = 7.5e-09) amino acids 180 to 199 (20 residues), 23.8 bits, see alignment (E = 6.5e-09) amino acids 202 to 223 (22 residues), 12.3 bits, see alignment (E = 3e-05) amino acids 225 to 247 (23 residues), 24.3 bits, see alignment (E = 4.6e-09) amino acids 276 to 294 (19 residues), 18.4 bits, see alignment (E = 3.4e-07) amino acids 297 to 319 (23 residues), 12.8 bits, see alignment (E = 2.1e-05) amino acids 321 to 343 (23 residues), 27.9 bits, see alignment (E = 3.2e-10) amino acids 345 to 367 (23 residues), 12.6 bits, see alignment (E = 2.5e-05) PF13855: LRR_8" amino acids 154 to 212 (59 residues), 28 bits, see alignment E=3e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc1800)

Predicted SEED Role

"FIG00976732: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XYF8 at UniProt or InterPro

Protein Sequence (401 amino acids)

>RS_RS09085 GALA protein (Ralstonia solanacearum GMI1000)
MPFFPPEIWTEIARGTKPADMQSLRAVSRAVKMGAEASIPQLTITHRDSGKRPPSVAGCL
ELNRLTLVGHFTDAYLQRLPASLTALDLSRCEGPITSAGIARLLALPLERLDVSGCGLDA
ESARLLASHPTLTVLNISRNAIGDDGAAALAANPKLTSLNVGRNGISDAGARALVACAGL
TKLDISDNRIGDAGARALAGSAKLNKLDAGDCGIGPEGARALAASQTLTRLDLRYNEIGV
GGAEALAANPRLTSLNVCGNALGSAGAALLAASAALTELDIGNNGIGNAGARALGANATL
VKLSVANNGIEEAGARALAASTTLTALDIGSNRIGDAGAQALAANDTLVTLDASANWIGD
PGALALADNTRLATLNVGANRIGEAGMRALEASTTLAVLKT