Protein Info for RS_RS08870 in Ralstonia solanacearum GMI1000

Annotation: exo-poly-galacturonase signal peptide protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 702 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF00295: Glyco_hydro_28" amino acids 396 to 560 (165 residues), 62.3 bits, see alignment E=2.2e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc1756)

Predicted SEED Role

"macromolecule metabolism; macromolecule degradation; degradation of polysaccharides"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XYK2 at UniProt or InterPro

Protein Sequence (702 amino acids)

>RS_RS08870 exo-poly-galacturonase signal peptide protein (Ralstonia solanacearum GMI1000)
MRQRKMGRGAALLLAAMLAGALVACGSGEGDGASGLSVSGGTAQTTTQTVGSTCSPVNVR
ATSGTRSTVPQHPCVPALAYDDTSITLAWNKPDIYADVADYNVYMNGTKLGSASENNAVH
SVAKRYIDRFYAEDTAGFHTRMTFHSFRVTGLAPDTAYTFTIRSVDRSGKESADSVPVVH
RTAAAFTRVYDVAKLGARGDGATLNTAVIQKAIDDCAGTSTTAYGCKVLIPADDAGGAVF
VSGALFLRSNMTLEVAEGATLRGSADAADYPLAKGYQLYSYFTNVTDDRRPPSLLNTLSP
AHMNGATALADHQGYDDRRGVFSNIRVTGKGTLDGSGWVRRGTDTIDEVGNRLASFAPGN
ASKWSTLGVLAKRQMLAAQAEAGGTLDSTQNANYYSNRRSSLATFRGTRNLYFGDLTLTN
PALHGVMFIESDNMVFANTVTQTFDINNADGVEFGNSSNAVVFNNFIDSGDDNINFAAGQ
GKNYEGGTPQQYAWIFNNYMREGHGGVVAGSHTGAWIQDILAEDNVMFMTDNGLRLKSTP
ATGGGARRIVFRDTAMREVGTKNSVSAGGQTFANNTNGSPFILTLSYSAGSNVFDNAAAA
AQFRDITVNRVTIDNGNPGTGGAMISVDGYDGTDPSLGYPETFHENVLFDTVSITRAKPA
SISRLKDSTFKDVTITNWGTAATPWSIRDASGLTFSNVKPAP