Protein Info for RS_RS08745 in Ralstonia solanacearum GMI1000

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 278 transmembrane" amino acids 21 to 45 (25 residues), see Phobius details amino acids 81 to 101 (21 residues), see Phobius details amino acids 112 to 136 (25 residues), see Phobius details amino acids 148 to 168 (21 residues), see Phobius details amino acids 189 to 212 (24 residues), see Phobius details amino acids 244 to 265 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 92 to 268 (177 residues), 56.5 bits, see alignment E=1.5e-19

Best Hits

KEGG orthology group: K02053, putative spermidine/putrescine transport system permease protein (inferred from 98% identity to rsl:RPSI07_1775)

Predicted SEED Role

"Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1)" in subsystem Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XYM7 at UniProt or InterPro

Protein Sequence (278 amino acids)

>RS_RS08745 ABC transporter permease (Ralstonia solanacearum GMI1000)
MKFARPMFAPHTSLIERIWYFALRGLAVLTLLYLVLPVLVIVPLSFSSSTFLAYPIPSYS
LRWYQNLVSSEEWRMAAKNSFIVAPAATLVATVFGTLAAIGLNKAEFRGKALLMAILVSP
MIVPVVVVGVGMYLFFAPLGLANTYTGLILAHAALGVPFVVTTVLATLQGFNHNLVRASL
SLGANPVMTFFRITLPVIAPGVISGALFAFATSFDEVVVTLFLAGADQVTLPRQMFTGIR
ENISPTIAALATILIVFSTCLLLTFEWLRGRAAAKAVA