Protein Info for RS_RS08125 in Ralstonia solanacearum GMI1000

Annotation: NINE protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 104 transmembrane" amino acids 18 to 37 (20 residues), see Phobius details amino acids 44 to 49 (6 residues), see Phobius details amino acids 66 to 89 (24 residues), see Phobius details PF05154: TM2" amino acids 14 to 59 (46 residues), 50.9 bits, see alignment E=7.1e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc1614)

Predicted SEED Role

"PROBABLE TRANSMEMBRANE PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XYZ2 at UniProt or InterPro

Protein Sequence (104 amino acids)

>RS_RS08125 NINE protein (Ralstonia solanacearum GMI1000)
MNETAREIMLYDAHKKSAGVAFLWWFLLGFLGAHRFYVNRVGSAVAQAIANVGGTWLVIL
DSGNTAGWVLGVLGGLWVLVDLFLIPGMVRAYNTMLAERLSAAS