Protein Info for RS_RS07595 in Ralstonia solanacearum GMI1000
Annotation: ribonuclease H
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 100% identical to RNH_RALSO: Ribonuclease H (rnhA) from Ralstonia solanacearum (strain GMI1000)
KEGG orthology group: K03469, ribonuclease HI [EC: 3.1.26.4] (inferred from 100% identity to rso:RSc1513)MetaCyc: 58% identical to ribonuclease HI (Escherichia coli K-12 substr. MG1655)
Ribonuclease H. [EC: 3.1.26.4]
Predicted SEED Role
"Ribonuclease HI (EC 3.1.26.4)" in subsystem Ribonuclease H (EC 3.1.26.4)
Isozymes
Compare fitness of predicted isozymes for: 3.1.26.4
Use Curated BLAST to search for 3.1.26.4
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q8XZ91 at UniProt or InterPro
Protein Sequence (151 amino acids)
>RS_RS07595 ribonuclease H (Ralstonia solanacearum GMI1000) MQEVTVYSDGACKGNPGLGGWGTVLVSGGHEKELFGGEAVTTNNRMELMAVIEAFRALKR PCRVKVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKNDDLWRTLDELVVTHEVSWHWV KGHAGHPGNERADALANKGVEIARQAIQAGA