Protein Info for RS_RS06845 in Ralstonia solanacearum GMI1000

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 487 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details amino acids 89 to 108 (20 residues), see Phobius details amino acids 114 to 136 (23 residues), see Phobius details amino acids 147 to 167 (21 residues), see Phobius details amino acids 174 to 193 (20 residues), see Phobius details amino acids 214 to 230 (17 residues), see Phobius details amino acids 236 to 256 (21 residues), see Phobius details amino acids 276 to 297 (22 residues), see Phobius details amino acids 310 to 329 (20 residues), see Phobius details amino acids 340 to 358 (19 residues), see Phobius details amino acids 364 to 387 (24 residues), see Phobius details amino acids 408 to 427 (20 residues), see Phobius details amino acids 452 to 470 (19 residues), see Phobius details TIGR00711: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family" amino acids 23 to 426 (404 residues), 255.3 bits, see alignment E=5.7e-80 PF07690: MFS_1" amino acids 28 to 417 (390 residues), 151.2 bits, see alignment E=1.8e-48

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc1365)

Predicted SEED Role

"Multidrug resistance protein B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8XZN0 at UniProt or InterPro

Protein Sequence (487 amino acids)

>RS_RS06845 MFS transporter (Ralstonia solanacearum GMI1000)
MATFTPTLETLRARHGERFKWLVLFTLTVGAVSSIISATIVNVAIPDLSRHFVLGQERAQ
WVSASFMVAMTLAMLLTPWLLLRFGLRRTFIGALLLLGVGGLVGGLSPTYGVMIAMRVVG
GVAAGIMQPLPNILILRVFPEREQGKAFGLFGFGVVLAPALGPSLGGFLVELFGWRSIFF
VVVPFTLLGWAMARRFMAINSSMAGEPKPLDWRGLLLVGAATVALLNGLVELHADVTRGV
ALMAVSAVCLAVFLFWQRRVESPLLDLRLFSYRQFAMGAVVAFIYGAGLYGSTYLLPVYM
QVALAYTPSSAGLVLLPPGLALAATIVVAGRLTSRIEPYRLVSFGLAALAVSFLLMTTNT
RATGYLLLIGIAAIGRVGLGFVLPSLSLGAMRGVDFTLIPQGSSAVNFLRQLGGAIGVSA
TGIFLQWRLAARGIGAVGGVAVDPEARIVACDETFVFLGVLCALAVAAAWRMRRREPAAV
VSAGVGP