Protein Info for RS_RS05755 in Ralstonia solanacearum GMI1000

Annotation: chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 623 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 188 to 208 (21 residues), see Phobius details PF17200: sCache_2" amino acids 37 to 184 (148 residues), 134.7 bits, see alignment E=5.4e-43 PF08269: dCache_2" amino acids 69 to 180 (112 residues), 92.9 bits, see alignment E=4.3e-30 PF17201: Cache_3-Cache_2" amino acids 71 to 183 (113 residues), 41.5 bits, see alignment E=2.2e-14 PF00015: MCPsignal" amino acids 325 to 480 (156 residues), 180.4 bits, see alignment E=5.8e-57

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 100% identity to rso:RSc1155)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y089 at UniProt or InterPro

Protein Sequence (623 amino acids)

>RS_RS05755 chemotaxis protein (Ralstonia solanacearum GMI1000)
MSKLSFRQKLWLPLAFSLIALTLMSVFNAYQARGIRIEERRNNLVSVTSMALNLVKQYDD
LARGGVLTKEAAQQQALDRFRSLRYDKDGYFTITRSDNVVVMHPIKPEFIGKDQTGFKDA
QGNSVYVNLTSAARQPNGGFTSYVWPHVGGTALVPKTAFAQRYEPWDWVFSTGAYMDDIN
AAFMTSLYESGGLLLLAGAVLVLLAGVANRGLQRALGGDPAYAAEVANRIAGGDLSVEIA
TRPDDRDSLLYAMGRMRGALVQTIGRIRGASETIGTATREIASGNLDLSSRTEQQASSLE
ETASAMEELMSTVQQNADNANQANQLAVSASDVAVRGGDVVSRVVETMGSINASSRKIVD
IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDD
SVTNVDAGSALVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAVTQLDDA
TQQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLDPTMSAVRSVVAKAEPTIAPPVPKAA
EAGPATPVPVAAPVAAPAQAPRREPVKPSPEAARPKLQPRKAPVLAKRAARPDTAPATVP
AASPKPLHQPLVAAGDDADWETF