Protein Info for RS_RS04455 in Ralstonia solanacearum GMI1000

Annotation: DUF748 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1261 transmembrane" amino acids 50 to 73 (24 residues), see Phobius details PF05359: DUF748" amino acids 186 to 337 (152 residues), 89 bits, see alignment E=3.7e-29 amino acids 401 to 549 (149 residues), 62.2 bits, see alignment E=6.9e-21 amino acids 615 to 766 (152 residues), 133.6 bits, see alignment E=6.8e-43 amino acids 871 to 1017 (147 residues), 138.8 bits, see alignment E=1.7e-44

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc0896)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y0Z7 at UniProt or InterPro

Protein Sequence (1261 amino acids)

>RS_RS04455 DUF748 domain-containing protein (Ralstonia solanacearum GMI1000)
MTTSPDSHSDLQPNATGWRARLGRWRSSPGWQRAARLGEQVRASRRTRRIGLGVLIFLAV
FGLLGAVGGPPLLHHLAETQLSKYLERPVTVGKIRLNPYTLRLEIDQLHIAERDGKTPFI
DIGHLHVNAAWSSVFRRAPVIEELKVDAPRVRIVRTAEQRFNFSDIVDKLTQPEVPPKPK
SNEPARFVFANLQLNNGAIQFVDQPLGAQHTVDGLQIGVPFLASLPADVDIFVQPLLAAR
IDGAPLHFAGKTKPFAQSLESSLNIKLDGLELPRYLGYVPGPLPVAVPQGKLTTDLTIDF
QKPRTGNPVLRVHGTAGLDGLEVTDTKKAPLVAAKQLRATLSDVRPLDNVYHLDMLSLDG
VRVDAVRAPDGSINFAQLGGKPAPEAKPAAPAPAAQPKPLDVAVGKLQLANSSVHWRDAT
TQPAADLVLDDLHGDAAVRTLGGPTTLDVGAKLASGGTLNVKGSTSLEKRTGELELKLEA
LKLAGIGPYLRQAGAPQLQNGALSADGKIALEFGADKFNVHAEPLVATLADLALAPATRN
DTALRAKQLRADIKSFDLAARTLALNEVRADGLQLDVLRKQDGSTVLTLLDTAQQAAAKA
KAAPTTSGAPAEKPWAVTVQALRLDNGAIGFEDQTNSRPVKVRVEPLNVLVQNASTDLGK
PVDVQIGAGLGSKGKLDVRGNVVPQPLKAELRVNAQNLSLAGFDPYLDKSLNAAITSALL
TMDGHLALNQGKALTVNYQGNATLGNVRLQDRVSSDDFLRWRSLALNRIQVSYDGATPRV
RVGALALSTFYARIIINPNGRLNLQDIRVQPTEEHRSLTQATPGPASSPAATSGNAVAAA
SVPAANPASAVTAGMPASAMAAAPKAGGADLRIDAITLQDGNIRFTDNFIKPNYTANLTT
IGGSVGTISTSAGQQPADVTLRGSVDGTAPVDIHGKVNPLAPTAFVDLSAKANDIELTNL
TPYSAKYAGYPITKGKLTMDLHYLLDQGKLSADNHIFIDQLTFGERVESKDATNLPVRLA
VALLKNSRGEIDVRVPVSGSLDDPQFSLGGVIVRAFVNLIVRAVTAPFSLLANAFGGSGG
EELGYIEFDPGTAVLSQASMAKIDKLATALKDRPALKLDIIGRVDPAVDRDGLRRETVNR
QIREQKLKDAGDATEADSTVKPDEMDKYLERAYKAAKFPKPRNVIGLAKSLPPDEMRKLM
ETNVQVTDSDLRELAQRRANAVHVALAERVEPARLFVVAPKLDPEGIKDKGKTSRVDFSL
K