Protein Info for RS_RS03645 in Ralstonia solanacearum GMI1000

Annotation: pilus biosynthesis protein PilY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1323 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF05567: Neisseria_PilC" amino acids 783 to 1135 (353 residues), 148.9 bits, see alignment E=2.1e-47

Best Hits

KEGG orthology group: K02674, type IV pilus assembly protein PilY1 (inferred from 100% identity to rso:RSc0724)

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y1G6 at UniProt or InterPro

Protein Sequence (1323 amino acids)

>RS_RS03645 pilus biosynthesis protein PilY (Ralstonia solanacearum GMI1000)
MKIIRGLVALVALGWVAVLGAASSVPTVAISTVPLYGRSQNIHPNLMLSLSVEFPTTGTA
YRGAYNNAKTYLGYFNATKCYTYDDTNGWFAISGDATSDTHECSGKFSGNFMNWAASSAI
DEFRMAMTGGDRVVDTTTQTVLQRAVLRSDFFRNGSYFPVKTINANNNGSAPSAVTPFNW
STLYIASCGNHIFFADQDYGNNTSCANPGGYGDQFNWWNGALTQRRAFRVQVQVCDSNEA
TSRTDLCFNYNGNYKPVGQMQLNADRMRFAAFGYLNDSSNNTWATQNERYGGVLRAPMKY
VGATAVDKDLNAITNSTPEFDTSTGILKKNPLNATEGVSGVINYLNQFGRTSVQLSGRSM
GDLGGPTDNPTGNYKTFDPVSEMFYESIRYLQFHPNGPTPEAISGLPNTTYSDNFPVYTS
WSADPILNQCQRNYAFLIGDINTHEDHYIPGNRKTGEGDPARPADSYSGFNVRDWTNKVG
ALETTYNPPLGGATSPITSTLGDVDHRSAHFASYYLAGTAYWAHTYGFRPDMPNARVTTF
VIDVNENGNGTVGDNQRNSQFFLAAKYGGFIDANNDGNPLRTYGQDGSTVVTNNSEWEAS
PTGSNVPYNWFLGGQPEAMIAAIKKIFTQITSYAGTLAGVSLSNGRITTTSSTSGGTFVY
TPGFDQQWNGRLAAYALTLSGTTVSTSSTPTWEAGALLTTAMQQKNGPANRAVYTLNSTS
LTGAPFTWTGISPAQQKLLSTNPDRGTADSYGQARLAYLRGDRSKEMNTVANTGMFRARS
SILGDIIGSAPTYAGTPAASIADTGYSTFYNTYSGRTPMVYVGANDGMLHAFNANTGAEV
FAYVPNAVFSNLNQLTSVSYAHQLYVDATPSIGEAQINGKWRSVLAGGFGGGAQGVYALD
ITDPTGTKEAAFSASNILWEFTDKDDADMGNVMGSPIMVKLRTGTDSSTKLPIYKWFVMV
ANGLNSNQNDGNANANAPAALFLLSLDKPAGAAWQLGTNYYKIVTPVPSATPTYNTANGL
SAPVAIVGAAGSVTQAYAGDLQGNLWKFILSGDSTTWNATSALPAYGGTPGKPLFTATDS
SGRRQPITIAPRVIYAPGGYMVLFGTGKYYESADTSTPTQTNSFYGIYDDDTNANYVSKG
RDQLNTVTALASSDGKSYTFSSPAYALGYTVGRKPGWKLDFPDQTEKQVTAITVSDGAVF
FNSLTGTDGCGTSGSSRSYALKALTGLPLSGNLSGYQSTTGVLGAPTLIIVSVTSTTRDT
VGGSVETKTKIVLSPGAQGLTVGSMGGSSTPGSTSTTESGVASQQLNSRIGWREVRNFVL
QTN