Protein Info for RS_RS03615 in Ralstonia solanacearum GMI1000

Annotation: pilus assembly protein PilY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 613 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF05567: Neisseria_PilC" amino acids 172 to 389 (218 residues), 31.8 bits, see alignment E=3.8e-12

Best Hits

KEGG orthology group: K02674, type IV pilus assembly protein PilY1 (inferred from 100% identity to rso:RSc0718)

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y1H2 at UniProt or InterPro

Protein Sequence (613 amino acids)

>RS_RS03615 pilus assembly protein PilY (Ralstonia solanacearum GMI1000)
MMRRQTACAWLCAMLPGTAHPGVNDHPAGRLPTHYLVAPGDDAWSGRLHALQFRPPPDMP
ETARPPAMWEAAKLLDARQPDTRRLWTFRQGDAFDRTAVPLRWESLAPPQQELLNGQDGH
GILRLGYLRGVRRHETEPPQLRRRTSILGAVRGAHVQLLGPPGFVLDARHGAFRRQHAGR
RWMVYLGANDGMLHAFDTLTGDERFAVMPDAALPAVVRNIAPGQAAPAPVCKRPFAADAW
TGAQWRSVLACATGAMAPGLFLVDVTNPDAETPPPLLAYDTHDDPAIGHVEDPVPVVPLA
DESGVQSRWFALSGNGDSTPSVESRLLLLALDQPRAAPWQPGRTAFAITVPPVASRGGLG
APAVALGPNGRASFAYAGDRHGQVWRFDLRGAPPWPQALGRNVLERRQPLFVATSRTGLR
QRLVGPILLAATAGGPLLVFAAMDASGAATVYGVSDASSGQRNLAREHLAGRTASETSEG
VALHADGGGPIGAGWRIDLPVGHTPGDLVSAGPDSLLLIARDADGRSRAYLLDPRSGLPA
GGSVLTGRVLASEPLVTVHAEQAATQADGSSTQVVQTRLWQIVEGRMQSMETHRQRRQLG
RLNWREVLEEGIR