Protein Info for RS_RS03470 in Ralstonia solanacearum GMI1000

Annotation: chain-length determining protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 transmembrane" amino acids 34 to 53 (20 residues), see Phobius details amino acids 267 to 288 (22 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc0690)

Predicted SEED Role

"PROBABLE TRANSMEMBRANE PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y1K0 at UniProt or InterPro

Protein Sequence (300 amino acids)

>RS_RS03470 chain-length determining protein (Ralstonia solanacearum GMI1000)
MNSDPRFDDDRPGDAAIVMLAQGAQFAQRHAKKLVAGGIAGAALAIGLALVLPKQWEASV
VIQVGQITNEAMPGTPLPAPTPVETVGRAVERLQLPQFEDLVLRKLGLPLEVNENASTDL
IRRSLKAVQLKNADLIEVTVRGFSQADAQRYTQAFSDALIGAHAVIAKPSLDKINANMAE
VRQQISAEEARKGELSALMRARDQAKSEVKFSESVLLASMVAENDKQLQGLRQREINIRE
QLNPERTFNTRLFDAVHVSRRHVFPSGLLFAAGGLVLGLLVAIGWGLTGDFRRGRLGSRK