Protein Info for RS_RS03255 in Ralstonia solanacearum GMI1000

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 44 to 67 (24 residues), see Phobius details amino acids 74 to 94 (21 residues), see Phobius details amino acids 99 to 114 (16 residues), see Phobius details amino acids 163 to 183 (21 residues), see Phobius details amino acids 215 to 235 (21 residues), see Phobius details amino acids 248 to 269 (22 residues), see Phobius details amino acids 281 to 301 (21 residues), see Phobius details amino acids 304 to 305 (2 residues), see Phobius details amino acids 310 to 332 (23 residues), see Phobius details amino acids 353 to 376 (24 residues), see Phobius details amino acids 378 to 401 (24 residues), see Phobius details PF07690: MFS_1" amino acids 23 to 351 (329 residues), 99.5 bits, see alignment E=9.6e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc0647)

Predicted SEED Role

"Macrolide-efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y1P3 at UniProt or InterPro

Protein Sequence (412 amino acids)

>RS_RS03255 MFS transporter (Ralstonia solanacearum GMI1000)
MTMLSSVPGYRALMAARVISSGIVWVDFTLIFSLLSYHWHADAVTIGVASALYGLPGLLL
GPFFGALADRLNPVTILIVSYLARCLSSVLLMVAPDVNLFVLLVLIKGLANLGAAPAEQV
VVRSMLSKAQFVSNASIMTTIDQLTKICAPLLGAGMASLHHPVAGFGLSAGLGLAGTLCV
GLLRKQVDMSKRDEASRQAPRHLQALLSLVRDNAAFRMAFIAAIAQTAVLALYDPLLALF
LKGKGMPTAVFGMIVSSTAAGAILGALVFKRVHSRSEQGTATMGLAAFGLTVAIPGVLAV
TDIAIPAGVLLAFWIANGCFYGLTAMSFGVTLQQQCPPQAIGTVSATARSVQLAVLVLGP
LAGAALSGLVGIPLVFVLSGVLAMLVAGALWGSSQVGAMRPFQRLAIRRKRP