Protein Info for RS_RS02845 in Ralstonia solanacearum GMI1000

Annotation: branched-chain amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 265 transmembrane" amino acids 31 to 50 (20 residues), see Phobius details amino acids 60 to 81 (22 residues), see Phobius details amino acids 86 to 108 (23 residues), see Phobius details amino acids 120 to 137 (18 residues), see Phobius details amino acids 150 to 173 (24 residues), see Phobius details amino acids 179 to 195 (17 residues), see Phobius details amino acids 202 to 218 (17 residues), see Phobius details amino acids 224 to 243 (20 residues), see Phobius details PF03591: AzlC" amino acids 39 to 175 (137 residues), 111.9 bits, see alignment E=1.7e-36

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc0568)

Predicted SEED Role

"Branched-chain amino acid transport protein AzlC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y1W9 at UniProt or InterPro

Protein Sequence (265 amino acids)

>RS_RS02845 branched-chain amino acid ABC transporter permease (Ralstonia solanacearum GMI1000)
MALARWGAALQRRWQAIDPAERAGFVAGARFYVGSLPPVFAWGLVTGVAMSKSVLTIPQA
IGMTLLVYAGSSQLAVLPLMAAGLPVWTVLLTAFIVNVRFIIFSAGLMQHFSHLPFGRRV
LIGFFNGDLPFVLFSQRYPGPGPERGKEGYLWGMALANWTIWQVSSLLGIVGASLFPDAW
GLALAGTLALIPVMVSTIRSRATLMAVAVAAVLALVAFKLPYRLSLVIAVVGAMAAGLAG
DEATARLQWQRRGAQPAPSEPKEGP