Protein Info for RS_RS02800 in Ralstonia solanacearum GMI1000

Annotation: polymerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 577 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 38 to 57 (20 residues), see Phobius details amino acids 68 to 86 (19 residues), see Phobius details amino acids 92 to 112 (21 residues), see Phobius details amino acids 124 to 144 (21 residues), see Phobius details amino acids 173 to 190 (18 residues), see Phobius details amino acids 196 to 213 (18 residues), see Phobius details amino acids 219 to 236 (18 residues), see Phobius details amino acids 248 to 270 (23 residues), see Phobius details amino acids 342 to 364 (23 residues), see Phobius details amino acids 373 to 389 (17 residues), see Phobius details amino acids 395 to 411 (17 residues), see Phobius details amino acids 423 to 443 (21 residues), see Phobius details PF15864: PglL_A" amino acids 165 to 189 (25 residues), 39.3 bits, see alignment (E = 6.2e-14) PF04932: Wzy_C" amino acids 203 to 354 (152 residues), 65 bits, see alignment E=1e-21 PF11846: Wzy_C_2" amino acids 376 to 539 (164 residues), 149.6 bits, see alignment E=1.6e-47

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc0559)

Predicted SEED Role

"Lipid A core - O-antigen ligase and related enzymes"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y1X8 at UniProt or InterPro

Protein Sequence (577 amino acids)

>RS_RS02800 polymerase (Ralstonia solanacearum GMI1000)
MLPVHRSLLLWPVWLATVACWSVPFLVAVHSYPIPTFYSEFVAAIGWVALAAGVLGSTWH
SKAGLPKVVLAPLALIGVLIVQLVVATPLNPFFTFAAIVFLLGTVAVCGLGARCRDVPGV
LESIAVAVIIGGLLTVAIECLHLFRVSGLPINWISIMPTGAGRRMWGNLNQPNHVATYLA
FGLAACLFLGSTRRRYWAPLAAIALALLLGMALTVSRMSWLHLVLVGGVAGLAWSAEERG
ARRWIRAGVPVLGLAVVYQLCNWLVAYANVLWHLDLPISLDERLQQGVGLRVFLWKHAWH
MFLAHPWLGGGWGDYAWNQYVQTDVLGHVEMSMNAHNLVLDLLAKVGVFGLLAVMLPFLG
LVHAAWKRRMTPALAFLYAVILVTVAHSMLEYPLHYLYFLLPFAFALGYVDDRKSRVLSP
DTAWVLTGIVAICGAVLTGRMWIDYQSVERLYYSLDGPVELQRYQRSGQLLLVPYGNLSI
ANNAGMTAETAPIMAAVEHQAVQFYPGSGTVQRWAIALAFQGKTDEALTQVRRLHNQYWI
DYAGDSKLLTLVCTKKLEGLATFCARLKAENLVVGVD