Protein Info for RS_RS02740 in Ralstonia solanacearum GMI1000

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 567 transmembrane" amino acids 27 to 52 (26 residues), see Phobius details amino acids 64 to 87 (24 residues), see Phobius details amino acids 99 to 117 (19 residues), see Phobius details amino acids 124 to 145 (22 residues), see Phobius details amino acids 165 to 187 (23 residues), see Phobius details amino acids 199 to 219 (21 residues), see Phobius details amino acids 253 to 276 (24 residues), see Phobius details amino acids 289 to 309 (21 residues), see Phobius details amino acids 321 to 340 (20 residues), see Phobius details amino acids 467 to 492 (26 residues), see Phobius details amino acids 508 to 529 (22 residues), see Phobius details amino acids 536 to 555 (20 residues), see Phobius details PF00083: Sugar_tr" amino acids 29 to 239 (211 residues), 101.7 bits, see alignment E=4.7e-33 amino acids 458 to 563 (106 residues), 24.1 bits, see alignment E=1.6e-09 PF07690: MFS_1" amino acids 33 to 337 (305 residues), 87.9 bits, see alignment E=6.5e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc0547)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y1Z0 at UniProt or InterPro

Protein Sequence (567 amino acids)

>RS_RS02740 MFS transporter (Ralstonia solanacearum GMI1000)
MATVQSAPNAPVGRMQPSPMTREEKKVIFASSLGTVFEWYDFYLYGSLAAIIAKQFFSGL
DPTAAFIFALLAFAAGFLVRPFGALVFGRLGDMIGRKYTFLITILIMGTSTFIVGLLPSY
TTIGAAAPVILIMLRLLQGLALGGEYGGAATYVAEHAPHGRRGNYTSWIQTTATLGLFLS
LIVILVVRELTGASFEDWGWRIPFLVSIVLLATSVYIRLSMSESPAFQKMKAEGKTSKAP
LTESFGQWRNLKIVILALVGLTAGQAVVWYTGQFYALFFLTQVLKVDAFTANVLIAVALA
IGTPFFVFFGSLSDRIGRKGIIMAGCLLAVLTYFPLFKALTHYANPALERAQQTAQITIK
ADPKECSFQGSPIAREVDFRSSCDIAKRTLAQSSASYESEDAPAGTIASVTIAGREIASL
NASRTADGQNFDADSKKKITDFKKSVSDALKAANYPSKADPAQMNTVMVLVILVILVIYV
TMVYGPIAAMLVELFPTRIRYTSMSLPYHIGNGWFGGLLPTISFALVAQHGNIYYGLWYP
IWIAAITFVIGALFVRETKDVDIYRHD