Protein Info for RS_RS02565 in Ralstonia solanacearum GMI1000

Annotation: LPS-assembly protein LptD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 811 signal peptide" amino acids 1 to 49 (49 residues), see Phobius details PF04453: LptD" amino acids 341 to 717 (377 residues), 389.5 bits, see alignment E=1.1e-120

Best Hits

Swiss-Prot: 100% identical to LPTD_RALSO: LPS-assembly protein LptD (lptD) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K04744, LPS-assembly protein (inferred from 100% identity to rso:RSc0515)

Predicted SEED Role

"Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y221 at UniProt or InterPro

Protein Sequence (811 amino acids)

>RS_RS02565 LPS-assembly protein LptD (Ralstonia solanacearum GMI1000)
MTEPNRARKTRQRTAFAAPDQRTAPRRGALALRPLVFAVAGVWTAASAAQSQGATQQAAS
AQAPSSAASVTALAVSGPTTPGGAPLVPKMAEPVKRPDNAVPSFAAADAMDGRTNEDIHL
RGHGELRRNGTVVKGDTLDYNQDTDFATATGNVRLFRDGTLVTGPDAALKVTANEGTMHT
PSYEFHTVGGRGSAERIDFIDKDNSRITKGTYTTCSPDNVDWYFSASQIDIDSDRQVGSG
RAGVLHFLGMPVFASPVFDFPLNDERRSGFLAPVFGYSSRSGADVTLPYYFNIAPNRDLT
LYPRLLSQRGLQLGAEYRYLSQTYNGVLRGEFLPNDREADRNRWSIALVHNQRLATGLNA
YVNYNKVSDSTYPDDLGRSIVTATQRQYTQEGGVTYSIGDWVALARVQKFQTLSTATTAL
SPPYERVPQLNLSYNRYDVGGFDINFQTDYTKFSIPTENTVQGERLFMQPTISYPIIRPG
WFVTPKFILNTTSYRLDRPTGDTQASQINRTLPTVSLDSGLTFERDTPLVSKWFGRSYIQ
TLEPRLFYVYTPFRDQSQIPLFDTAQSDYNLGQIFTENPYTGYDRIADNNKLTAGVTTRF
IESETGIERLRATLAQRLDFEGQRVTLAGSAPTSVRRYSDLLGATTIQMFRGIFFDTNLQ
YNQDIDRIMRSTMAFSWKPDANKVINLGYRYYRADANTGQLALEQTDISAQWPLTRRLYG
LGRIGYDMDAKKPSDMLLGFEYVADCWVGRLAVQRYSNATSGYTTHIFAQIEFKGLSKVG
NNPIDVIRLNVPGYQPVTAQPVTPSVLDQYE