Protein Info for RS_RS02035 in Ralstonia solanacearum GMI1000

Annotation: LPS export ABC transporter periplasmic protein LptC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details TIGR04409: LPS export ABC transporter periplasmic protein LptC" amino acids 20 to 202 (183 residues), 164.5 bits, see alignment E=8.9e-53 PF06835: LptC" amino acids 24 to 203 (180 residues), 161.9 bits, see alignment E=6.1e-52

Best Hits

KEGG orthology group: K11719, lipopolysaccharide export system protein LptC (inferred from 100% identity to rso:RSc0411)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y2C5 at UniProt or InterPro

Protein Sequence (210 amino acids)

>RS_RS02035 LPS export ABC transporter periplasmic protein LptC (Ralstonia solanacearum GMI1000)
MASERSQRLVSSLLQIMLRGLPILLMAVVCGVTFLLVQVNTPQTEETANQAKRHVADYTM
DGISATALDERGVTKYRFTGVHMNHYEDDLTYDVTFPALRIYAPDRPQVTARADLGKMNG
EGSIIDLYDNAKVVRAQGPDLRQDPLMTADSTYFQVLLNDDVVRTDKPVELHRGPSVMNA
NGLVFNNVTRQVQLLGNVRGRIEGLGAPKQ