Protein Info for RS_RS01855 in Ralstonia solanacearum GMI1000

Annotation: pirin family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 PF02678: Pirin" amino acids 18 to 123 (106 residues), 124 bits, see alignment E=2.8e-40 PF05726: Pirin_C" amino acids 176 to 275 (100 residues), 103 bits, see alignment E=1.1e-33

Best Hits

Swiss-Prot: 50% identical to Y3178_CAUVC: Pirin-like protein CC_3178 (CC_3178) from Caulobacter vibrioides (strain ATCC 19089 / CB15)

KEGG orthology group: K06911, (no description) (inferred from 100% identity to rso:RSc0377)

Predicted SEED Role

"Pirin-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y2F9 at UniProt or InterPro

Protein Sequence (289 amino acids)

>RS_RS01855 pirin family protein (Ralstonia solanacearum GMI1000)
MTSIQHIIGPHVRDLGGFSVKRVLPAAARQTVGPFIFFDHMGPVDFAPGEGIDVRPHPHI
GLATVTYLFDGSMVHRDSLGSVQTIVPGDVNWMTAGNGIVHSERTSPEVREQGARLHGIQ
TWVALPRGQEKVDPSFAHHAADTLPKLECPGVRGTVIAGDAFGLTSPVRVSSRTLYVALE
LAAGASLVIPPEHEDRGVYLVDGAVTIDGEALDPHHLAVLEPGGDITLTAQASSRVMLLG
GAPTDGHRHIYWNFVASDRADIEDAKQRWQDDRFARVPGETERIPLPAR