Protein Info for RS_RS01580 in Ralstonia solanacearum GMI1000

Annotation: type III secretion system YopJ family effector RipAE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 643 PF03421: Acetyltransf_14" amino acids 91 to 281 (191 residues), 167.3 bits, see alignment E=1.7e-53 amino acids 394 to 575 (182 residues), 35.5 bits, see alignment E=5.3e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc0321)

Predicted SEED Role

"FIG00977091: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y2L4 at UniProt or InterPro

Protein Sequence (643 amino acids)

>RS_RS01580 type III secretion system YopJ family effector RipAE (Ralstonia solanacearum GMI1000)
MLKTRITPATQPASTSTVAHPDGATESQTQPPQVSGPRARTADRNFTNLPTRHASARALK
QPVKLTRAASKVDTRALAAAAIQPGLSARLESMRQYLAELKTAAHADPNLRVETPGHRDA
EFLDLLVAVENARHPKLALSAHTISLNTLNTTNPAAVASLARNLETSMRSREPWHAVVDI
GGHAMALSVRHHPEQPKQISMIVVNSAGEHLSVPEWNLMATLLAGHLNHKLEQAGDPKGV
RIVLHCLNTGIQKTNHGGAIFALSAVKAMPGDEDIGKLHAHALSEAGKHADAVDVHVIDE
TPLLGPRFFKHMTHAFGLERMLTNRPDLRTAPVNKKTGLPLAQYQSQHLRPHRLLQHVRE
TSSTSYEDKRLQLYERAITHLASARVEALTDHLDALRRACKGKADMPAPRDAEFLDLLVE
VENKLDPQLRLSAHKIDAPRLAVRDPGAIASLAPVVADGVRGGGDWHATLDIGDGHHVAV
AARHDAAHPTHVSLAVLDGAGSPFSPANWRDLASTVAKCLDAAGNGRTGKVWLTYVDASS
QATTSNSALFALRATKEMKESGLQHDGLIDQMHKNALNLARSAQTAVSLGKYGGPAPLDP
EYGTGGGADRYSLDGILRQEHIKMYKHAIRHFERAKEPAPERH