Protein Info for RS_RS01260 in Ralstonia solanacearum GMI1000

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 912 PF12796: Ank_2" amino acids 86 to 164 (79 residues), 41.1 bits, see alignment E=5.5e-14 amino acids 158 to 231 (74 residues), 49.5 bits, see alignment E=1.3e-16 PF13637: Ank_4" amino acids 98 to 148 (51 residues), 25.8 bits, see alignment 2.7e-09 amino acids 135 to 186 (52 residues), 34.2 bits, see alignment 6.2e-12 PF00023: Ank" amino acids 133 to 165 (33 residues), 17.4 bits, see alignment (E = 1.1e-06) amino acids 166 to 198 (33 residues), 23.4 bits, see alignment (E = 1.4e-08) amino acids 200 to 232 (33 residues), 21.1 bits, see alignment (E = 7.3e-08) PF13857: Ank_5" amino acids 153 to 190 (38 residues), 28.9 bits, see alignment (E = 2.9e-10) PF13606: Ank_3" amino acids 166 to 192 (27 residues), 18.8 bits, see alignment (E = 4.3e-07)

Best Hits

KEGG orthology group: K06867, (no description) (inferred from 100% identity to rso:RSc0257)

Predicted SEED Role

"FIG00975335: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y2S8 at UniProt or InterPro

Protein Sequence (912 amino acids)

>RS_RS01260 hypothetical protein (Ralstonia solanacearum GMI1000)
MDFPRRHSLSPLRFLTPSRSPQTERTPGASPAPGNTPRRASGPLSGLTKGFNALFKADPE
KAALRQAFSMAEAGKAEPLAGLLQSHPHLVMAVNANGTTLLASAAKRGHLEVVRLILARP
ESAILINQINKRGETPLQRAVEAGRTAVVGALLQHAEIDPNRVDKHGQTPLHIAAGNRHA
DITRALVEHPRTEVNRPDRDGNTALHLAVRKRGLDAAGELLRHPHIDPNQPNAKHHTPLT
MAIAKLHVDCVHALASHPGVQVNRPGTDGHPPVWQAVAQFVEHLESGSFARHRVRTGKEL
DCLFELARSPHIDLNVLGPGGHTPLTRLACAKPHRYVQAGRDTTFTEIQHKQRVVDAVRA
FLQGSSEGRNGFNPNARNIDGQVAVQIALRNGHDALASRLLQDPRTDPGAAVTRLIDKPG
RLSRLLNPGGPEPKTHGAGQAFLVEQLERSIRFRNPDGTANPWISLALCEYAARFEITAE
AQRRASAESRSCRPDAASYAAQALEFSMAFQQAPIIKVAAQALIHHAPRHQAHFNLGGID
VSRSEIQAWAAGDVPEAVLNAHIEQYVRDGRINVHADALLTRGQQLLNAMKRLTPEDQRR
SVEQSAADLRAVIGQRSDQLKQALKAEASEAALEALAAFEAFETVEAMEAMAAEQAEDAE
EAREEEEVEDAQEDEAAQARAHTEAEHQKARLKGRIDDLRNAGKGIKHLLKMGPTKEDPD
YAFHANVALADTWSYVQSRKDPELKDNLTAALLLRLADVGKDVPCNTGCIQRVAFASEGI
DTSLHQGEPGRGAMYEEIVSIAKAVNERYKARYGEVEAFDPAAPGTSSAPSVTARDRQAI
LRYTKGAEIDDDVVTDVKRDMVRADVLADLVGRRGWTRATVEELLAPILDNVEYLDEFSV
KASGSPDVHAGP