Protein Info for RS_RS01180 in Ralstonia solanacearum GMI1000

Annotation: DoxX family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 145 transmembrane" amino acids 24 to 44 (21 residues), see Phobius details amino acids 64 to 85 (22 residues), see Phobius details amino acids 91 to 109 (19 residues), see Phobius details amino acids 120 to 140 (21 residues), see Phobius details PF07681: DoxX" amino acids 28 to 111 (84 residues), 50.6 bits, see alignment E=1.3e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc0240)

Predicted SEED Role

"DoxX family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y2U2 at UniProt or InterPro

Protein Sequence (145 amino acids)

>RS_RS01180 DoxX family protein (Ralstonia solanacearum GMI1000)
MTRSAQTPDAASPTAAAGPARDTALHAGLLFLRVAGSALLLYVHGLPKVLHYSQELARIE
DPFRLGAAPTLLLAILSETVCPLLIALGMLARLACLPIVFLLLVALLVVHREWSIADAQF
GWLLLILFVTVLIAGPGRFSLSPKA