Protein Info for RS_RS01025 in Ralstonia solanacearum GMI1000

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 408 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 60 to 81 (22 residues), see Phobius details amino acids 88 to 107 (20 residues), see Phobius details amino acids 114 to 135 (22 residues), see Phobius details amino acids 147 to 169 (23 residues), see Phobius details amino acids 175 to 196 (22 residues), see Phobius details amino acids 220 to 242 (23 residues), see Phobius details amino acids 256 to 278 (23 residues), see Phobius details amino acids 286 to 306 (21 residues), see Phobius details amino acids 312 to 333 (22 residues), see Phobius details amino acids 345 to 366 (22 residues), see Phobius details amino acids 373 to 394 (22 residues), see Phobius details PF07690: MFS_1" amino acids 27 to 342 (316 residues), 114.1 bits, see alignment E=3.4e-37

Best Hits

Swiss-Prot: 61% identical to OPDE_PSEAE: Transcription regulatory protein OpdE (opdE) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: None (inferred from 100% identity to rso:RSc0207)

Predicted SEED Role

"Arabinose efflux permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y2X4 at UniProt or InterPro

Protein Sequence (408 amino acids)

>RS_RS01025 MFS transporter (Ralstonia solanacearum GMI1000)
MEGHTHADPHHAEVSGGRPAWGAVFALSLAAFILVASEFMPVSLLTPIAGSLHLTEGQAG
QAISVSGAFALLTSLFIPAMAARLDRKVLLLLLTLLTVVSGVVVTLAPDYSTFIIGRALI
GVAIGGFWSMSAATAMRLVPHHDVPHALAIVNGGNALATVLAAPLGSLLGAVVGWRGAFF
CIVPVATIALVWQWMTLPALKADSSPGAAGDVFTLLRRPAVALGMAAVGLFFMGQFMLFT
YLRPFLETVTNTRASTLSFVLLVIGVAGFVGTAVIGTFLKDGLYRTLIVIPVLMAGIALA
LASFGGSLAASTILLAIWGLVATAAPVGWWTWLARTLPQDAETGGGLMVAIIQLAITLGA
AGGGAMFDAGGYRATFGMSAAVLVAAAVLAILAARAGTRTVRAGAAVA