Protein Info for RS_RS00855 in Ralstonia solanacearum GMI1000

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 474 transmembrane" amino acids 197 to 213 (17 residues), see Phobius details amino acids 219 to 239 (21 residues), see Phobius details amino acids 260 to 285 (26 residues), see Phobius details amino acids 290 to 309 (20 residues), see Phobius details amino acids 316 to 336 (21 residues), see Phobius details amino acids 342 to 361 (20 residues), see Phobius details amino acids 385 to 408 (24 residues), see Phobius details amino acids 420 to 438 (19 residues), see Phobius details amino acids 451 to 473 (23 residues), see Phobius details PF01040: UbiA" amino acids 204 to 450 (247 residues), 73.9 bits, see alignment E=1.3e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to rso:RSc0173)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8Y308 at UniProt or InterPro

Protein Sequence (474 amino acids)

>RS_RS00855 membrane protein (Ralstonia solanacearum GMI1000)
MCSKPLVVDLDGTLIRSDILIESGFAYLKSAPHRFYEPLLWLARGGKPVLKARLAQATDL
DVTVLPYDHAVLEWLHTERASGRTLVLATASHVRYAEAISAHLGLFDKTFATDGSTNLSA
RNKRDRLVAEYGEKGFDYAGNSHDDVIVWQAAERAYVVNPHGGVERAARKIGNVERVIDA
RPAPLKIWSKSLRLHQWLKNLLIFVPLLAGHLLGSPEQVLAALLAFLTFGLCASSVYLLN
DLLDLEDDRHHPVKRKRPFASGALPLLWGGGMFPVLLVTAFLLAWLCLPWRFAAVLLGYY
ALTLAYSAFLKRRVMIDVVVLATLYTMRIIAGAAAVGAHLTFWLLAFSMFIFLSLALVKR
YAELHAIKARGLVKTRGRGYEASDLPMLSSLGSAAGYLAVLVLALYIQDAKTASLYRHPQ
AIWLACPLMLYWVSRTWIITHRGQMHDDPIVFAVRDRVSLAVVALCGFIFWAAI